داده های ثبت شده در پورتال
1
Mohammad Amin Sohrabi, Fatemeh Zare Mirakabad, Saeed Shiri Ghidary, Mahsa Saadat, Seyed-Ali Sadegh-Zadeh,
"A novel data augmentation approach for influenza a subtype prediction based on HA proteins", COMPUTERS IN BIOLOGY AND MEDICINE,
Vol. 172,
Num. 172,
Page 108316-108316,
March 2024,
2
Nikta Gohari Sadr, Armin Behjati, Fatemeh Zare Mirakabad,
"RNA-Protein interaction prediction using transformers and asymmetric Siamese neural network", ,
Vol. 37,
Num. 1,
Page 74-91,
March 2024,
3
Milad Besharatifard, Zahra Ghorbanali, Fatemeh Zare Mirakabad,
"Adverse drug reaction prediction using voting ensemble training approach", AUT Journal of Mathematics and Computing,
Vol. 5,
Num. 1,
Page 45-60,
January 2024,
4
Alireza Shariatmadar Taleghani, Yasaman Zohrab Beigi, Fatemeh Zare Mirakabad, Ali Masoudi?Nejad,
"Exploring ceRNA networks for key biomarkers in breast cancer subtypes and immune regulation", Scientific Reports,
Vol. 20795,
Num. 13,
Page 1-16,
November 2023,
5
Mehdi Paykan Heyrati, Zahra Ghorbanali, Mohammad Akbari, Ghasem Pishgahi, Fatemeh Zare Mirakabad,
"BioAct-Het: A Heterogeneous Siamese Neural Network for Bioactivity Prediction Using Novel Bioactivity Representation", ACS Omega,
Vol. 47,
Num. 8,
Page 44757-44772,
November 2023,
6
Zahra Ghorbanali, Fatemeh Zare Mirakabad, Najmeh Salehi, Mohammad Akbari, Research Open Access Published: 03 October 2023 Drugrep-Hesiagraph: When Heterogenous,
"DrugRep-HeSiaGraph: when heterogenous siamese neural network meets knowledge graphs for drug repurposing", BMC BIOINFORMATICS,
Vol. 374,
Num. 24,
Page 1-31,
October 2023,
7
Fayaz Soleymani Babadi, Zahra Razaghi Moghadam Kashani, Fatemeh Zare Mirakabad, Zoran Nikoloski,
"Prediction of metabolite–protein interactions based on integration of machine learning and constraint-based modeling", Bioinformatics Advances,
Vol. 3,
Num. 1,
Page 1-13,
July 2023,
8
Zahra Ghorbanali, Fatemeh Zare Mirakabad, Mohammad Akbari, Najmeh Salehi, Ali Masoudi-Nejad,
"DrugRep-KG: Toward Learning a Unified Latent Space for Drug Repurposing Using Knowledge Graphs", JOURNAL OF CHEMICAL INFORMATION AND MODELING,
Vol. 10,
Num. 21,
Page 1-20,
April 2023,
9
Maryam Rastegari, Najmeh Salehi, Fatemeh Zare Mirakabad,
"Biomarker prediction in autism spectrum disorder using a network-based approach", BMC MEDICAL GENOMICS,
Vol. 16,
Num. 12,
Page 1-13,
January 2023,
10
Armin Behjati, Fatemeh Zare Mirakabad, Shahriar Arab, Abbass Nowzari Dalini,
"Protein sequence profile prediction using ProtAlbert transformer", COMPUTATIONAL BIOLOGY AND CHEMISTRY,
Vol. 99,
Num. 107717,
Page 1-13,
June 2022,
11
Javad Rezaei, Fatemeh Zare Mirakabad, Sayed-Ali Marashi, S.Ali Mirhassani,
"The assessment of essential genes in the stability of PPI networks using critical node detection problem", AUT Journal of Mathematics and Computing,
Vol. 3,
Num. 1,
Page 59-76,
February 2022,
12
Javad Rezaei, Fatemeh Zare Mirakabad, S.Ali Mirhassani, Seyed Amir Marashii,
"EIA-CNDP: An exact iterative algorithm for critical node detection problem", COMPUTERS & OPERATIONS RESEARCH,
Vol. 127,
Num. 1,
Page 105-138,
November 2020,
13
Najmeh Salehi, Bahareh Attaran, Fatemeh Zare Mirakabad, Bahareh Ghadiri, Maryam Esmaeli, Mohadeseh Shakaram, Mohammad Tashakoripour, Mahmoud Eshagh Hossini, Marjan Mohammadi,
"The outward shift of clarithromycin binding to the ribosome in
mutant Helicobacter pylori strains", HELICOBACTER,
Vol. 1,
Num. 1,
Page 1-11,
July 2020,
14
Nafiseh Banirazi Motlagh, Bahram Mohammadpoor Esfahani, Behnoosh Ashrafi, Fatemeh Zare Mirakabad,
"The Assessment of Histone Acetylation marks in the Vicinity of Transcription Factor Binding Sites in Human CD4 + T Cells using Information Theory Methods", COMPUTATIONAL BIOLOGY AND CHEMISTRY,
Vol. 86,
Num. 0,
Page 1-9,
March 2020,
15
Farzaneh Salari, Fatemeh Zare Mirakabad, Mohammad Hossein Alavi, Lea Girard, Mahya Ghafari, Hassan Roknizahed, Rene De Mot,
"Draft Genome Sequence of Pseudomonas aeruginosa Strain LMG 1272, an Atypical White Line Reaction Producer", MICROBIOLOGY RESOURCE ANNOUNCEMENTS,
Vol. 9,
Num. 7,
Page 1-3,
February 2020,
16
Fazeleh Sadat Mohseni Salehi Monfared, Fatemeh Zare Mirakabad, Mehdi Sadeghi, Soudeh Ghafouri-Fard,
"A Stochastic Model of DNA Double-Strand Breaks Repair Throughout the Cell Cycle", BULLETIN OF MATHEMATICAL BIOLOGY,
Vol. 0,
Num. 0,
Page 517-539,
January 2020,
17
Mahroo Moridi, Marzyeh Gadiri, Ali Sharifi-Zarchi, Fatemeh Zare Mirakabad,
"The assessment of efficient representation
of drug features using deep learning for
drug repositioning", BMC BIOINFORMATICS,
Vol. 20,
Num. 577,
Page 1-11,
November 2019,
18
Farzaneh Salari, Fatemeh Zare Mirakabad, Mehdi Sadeghi,
"A new hash function and its use in read mapping on genome", AUT Journal of Mathematics and Computing,
Vol. 1,
Num. 1,
Page 1-4,
July 2019,
19
Fatemeh Zare Mirakabad, Nafiseh Banirazi Motlagh,
"Transcription Factor Binding Sites Prediction Based on Histone Acetylations using Neural Networks", ,
Vol. 32,
Num. 4,
Page 527-538,
June 2019,
20
Farzaneh Salari, Fatemeh Zare Mirakabad, Mehdi Sadegi, Hassan Roknizadeh,
"Assessing the impact of exact reads on reducing the error rate of read mapping", BMC BIOINFORMATICS,
Vol. 19,
Num. 19,
Page 406-421,
November 2018,
21
َAli Jalivand, Behzad Akbari, Fatemeh Zare Mirakabad,
"S-FLN: A sequence-based hierarchical approach for functional linkage network reconstruction", JOURNAL OF THEORETICAL BIOLOGY,
Vol. 437,
Num. 437,
Page 149-162,
January 2018,
22
Fazeleh Sadat Mohseni Salehi Monfared, Fatemeh Zare Mirakabad, Soudeh Ghafouri-Fard, Mehdi Sadeghi,
"The effect of stochasticity on repair of DNA double strand breaks throughout
non-homologous end joining pathway", MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA,
Vol. 1,
Num. 1,
Page 1-23,
December 2017,
23
Fatemeh Zare Mirakabad, Nafiseh Banirazi Motlagh,
"Transcription Factor Binding Sites Prediction Based on Histone Acetylations using Neural Networks", ,
Vol. 31,
Num. 1,
Page 1-5,
November 2017,
24
Soheila Montaseri, Fatemeh Zare Mirakabad, Mohammad Genjtabesh,
"Evaluating the quality of SHAPE data simulated
by k-mers for RNA structure prediction", Journal of Bioinformatics and Computational Biology,
Vol. 15,
Num. 6,
Page 1-17,
October 2017,
25
Hossein Bankikoshki, S.Ali Seyyedsalehi, Fatemeh Zare Mirakabad,
"Dimensionality Reduction of Binding Site Sequence Data on Human Genome Using a Deep Autoencoder Neural Network", Iranian Journal of Biomedical Engineering,
Vol. 11,
Num. 3,
Page 219-230,
September 2017,
26
Mohadeseh Lotfi, Fatemeh Zare Mirakabad, Soheila Montaseri,
"RNA design using simulated SHAPE data", GENES & GENETIC SYSTEMS,
Vol. 0,
Num. 0,
Page 1-10,
August 2017,
27
Soheila Montaseri, Mohammad Ganjtabesh, Fatemeh Zare Mirakabad,
"Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data", PLOS ONE,
Vol. 11,
Num. 0,
Page 1-13,
November 2016,
28
Yousef Seyfari, Farzad Didehvar, Hadi Banaee, Fatemeh Zare Mirakabad,
"Evaluating the accuracy of splice site prediction based on integrating Jensen-Shannon divergence and a polynomial equation of order 2", International Journal of Computer Applications,
Vol. 151,
Num. 5,
Page 1-5,
October 2016,
29
Mehri Mollalo, Fatemeh Zare Mirakabad,
"Motif Finding in upstream regulatory regions of co-expressed genes
using Cuckoo optimization Algorithm and Simulated Annealing", ,
Vol. 46,
Num. 3,
Page 333-344,
September 2016,
30
Marziyeh Movahedi, Fatemeh Zare Mirakabad, Seyed Shahriar Arab,
"Evaluating the accuracy of protein design using native secondary sub-structure", BMC BIOINFORMATICS,
Vol. 17,
Num. 353,
Page 1-11,
September 2016,
31
Morteza Kouhsar, Fatemeh Zare Mirakabad, Yousef Jamali,
"WCOACH: protein -protein complex prediction in weighted PPT networks", GENES & GENETIC SYSTEMS,
Vol. 90,
Num. 0,
Page 317-324,
March 2016,
32
Mohadeseh Lotfi, Fatemeh Zare Mirakabad, ُSoheila Montaseri,
"RNA secondary structure prediction based on SHAPE data
in helix regions", JOURNAL OF THEORETICAL BIOLOGY,
Vol. 380,
Num. 0,
Page 178-182,
May 2015,
33
Soheila Montaseri, Nasrollah Mogadam Chakeri, Fatemeh Zare Mirakabad,
"RNA secondary structure prediction based on genetic algorithm", ,
Vol. 27,
Num. 3,
Page 428-437,
February 2015,
34
Mohammad Ganjtabesh, Soheila Montaseri, Fatemeh Zare Mirakabad,
"using tempreture effects to predict the interactions between two RNAs", JOURNAL OF THEORETICAL BIOLOGY,
Vol. 364,
Num. 364,
Page 98-102,
January 2015,
35
Mohammad Talebzadeh, Fatemeh Zare Mirakabad,
"Transcription Factor Binding Sites Prediction Based on
Modified Nucleosomes", PLOS ONE,
Vol. 2,
Num. 9,
Page 1-10,
February 2014,
36
Mohammad Gakjtabesh, Fatemeh Zare Mirakabad, Abbss Nowzari,
"Inverse RNA folding solution based on multi-objective genetic algorithm and gibbs sampling method", EXCLI JOURNAL,
Vol. 12,
Num. 0,
Page 546-555,
June 2013,
37
Hesamedin Torabi Dashti, Fatemeh Zare Mirakabad, Nima Aghaeepour, Hayedeh Ahrabian, Abbas Nowzari-Dalini,
"PreRkTAG: Prediction of RNA Knotted Structures Using Tree Adjoining Grammars", Iranian Journal of Biotechnology,
Vol. 11,
Num. 1,
Page 3-13,
January 2013,
38
Mohammad Reza Rafsanjani Sadeghi, Fatemeh Zare Mirakabad, Maryam Tahmasebi, Mahdi Sadeghi,
"EPWM: An Extended Position Weight Matrix for Motif Representation in Biological Sequences", Journal of Basic and Applied Scientific Research,
Vol. 2,
Num. 7,
Page 7276-7286,
July 2012,
39
Siheila Montaseri, Nasrollah Moghadam, Fatemeh Zare Mirakabad,
"A heuristic approach to RNA-RNA interaction prediction", JOURNAL OF THEORETICAL BIOLOGY,
Vol. 300,
Num. 300,
Page 206-211,
January 2012,